CRAN Package Check Results for Package MetaIntegrator

Last updated on 2019-08-23 13:46:57 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.1 12.50 146.42 158.92 OK
r-devel-linux-x86_64-debian-gcc 2.1.1 OK
r-devel-linux-x86_64-fedora-clang 2.1.1 180.05 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.1 187.52 NOTE
r-devel-windows-ix86+x86_64 2.1.1 26.00 132.00 158.00 OK
r-patched-linux-x86_64 2.1.1 11.85 142.79 154.64 OK
r-patched-solaris-x86 2.1.1 208.30 NOTE
r-release-linux-x86_64 2.1.1 12.04 143.40 155.44 OK
r-release-windows-ix86+x86_64 2.1.1 49.00 195.00 244.00 OK
r-release-osx-x86_64 2.1.1 ERROR
r-oldrel-windows-ix86+x86_64 2.1.1 23.00 196.00 219.00 OK
r-oldrel-osx-x86_64 2.1.1 WARN

Check Details

Version: 2.1.1
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘BiocManager’ ‘DT’ ‘GEOmetadb’ ‘RMySQL’ ‘RSQLite’ ‘gplots’ ‘pheatmap’
     ‘readr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-oldrel-osx-x86_64

Version: 2.1.1
Check: package dependencies
Result: ERROR
    Packages required but not available:
     'multtest', 'Biobase', 'preprocessCore', 'GEOquery', 'GEOmetadb',
     'AnnotationDbi'
    
    Packages suggested but not available for checking:
     'BiocStyle', 'BiocGenerics', 'snplist'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 2.1.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BiocStyle’
Flavor: r-oldrel-osx-x86_64

Version: 2.1.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 26-27 (MetaIntegrator.Rmd)
    Error: processing vignette 'MetaIntegrator.Rmd' failed with diagnostics:
    there is no package called 'BiocStyle'
    Execution halted
Flavor: r-oldrel-osx-x86_64