CRAN Package Check Results for Package PGRdup

Last updated on 2019-09-22 13:46:18 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.3.3 8.08 57.76 65.84 ERROR
r-devel-linux-x86_64-debian-gcc 0.2.3.4 6.91 153.75 160.66 OK
r-devel-linux-x86_64-fedora-clang 0.2.3.4 148.17 OK
r-devel-linux-x86_64-fedora-gcc 0.2.3.4 139.31 OK
r-devel-windows-ix86+x86_64 0.2.3.4 39.00 140.00 179.00 OK
r-patched-linux-x86_64 0.2.3.4 7.26 125.52 132.78 OK
r-patched-solaris-x86 0.2.3.4 105.30 WARN
r-release-linux-x86_64 0.2.3.4 7.54 127.47 135.01 OK
r-release-windows-ix86+x86_64 0.2.3.4 19.00 140.00 159.00 OK
r-release-osx-x86_64 0.2.3.4 WARN
r-oldrel-windows-ix86+x86_64 0.2.3.3 14.00 125.00 139.00 OK
r-oldrel-osx-x86_64 0.2.3.4 WARN

Check Details

Version: 0.2.3.3
Check: examples
Result: ERROR
    Running examples in 'PGRdup-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: MergeKW
    > ### Title: Merge keyword strings
    > ### Aliases: MergeKW MergePrefix MergeSuffix
    >
    > ### ** Examples
    >
    > names <- c("Punjab Bold", "Gujarat- Dwarf", "Nagpur.local", "SAM COL 144",
    + "SAM COL--280", "NIZAMABAD-LOCAL", "Dark Green Mutant",
    + "Dixie-Giant", "Georgia- Bunch", "Uganda-erect", "Small Japan",
    + "Castle Cary", "Punjab erect", "Improved small japan",
    + "Dark Purple")
    >
    > # Merge pairs of strings
    > y1 <- list(c("Gujarat", "Dwarf"), c("Castle", "Cary"), c("Small", "Japan"),
    + c("Big", "Japan"), c("Mani", "Blanco"), c("Uganda", "Erect"),
    + c("Mota", "Company"))
    > names <- MergeKW(names, y1, delim = c("space", "dash", "period"))
    Warning in gsub(pat, "", x, perl = TRUE) :
     PCRE pattern compilation error
     'invalid range in character class'
     at '-.]+(?=Dwarf)[[:digit:]]*\b|\b(?<=Gujarat)[\s-.]+(?=Dwarf[[:digit:]]*$)'
    Error in gsub(pat, "", x, perl = TRUE) :
     invalid regular expression '(?i)(?<=^Gujarat)[\s-.]+(?=Dwarf)[[:digit:]]*\b|\b(?<=Gujarat)[\s-.]+(?=Dwarf[[:digit:]]*$)'
    Calls: MergeKW -> sapply -> lapply -> FUN -> gsub
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.3.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'Introduction.Rmd' using rmarkdown_notangle
    Quitting from lines 327-351 (Introduction.Rmd)
    Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
    invalid regular expression '(?i)(?<=^Gujarat)[\s-.]+(?=Dwarf)[[:digit:]]*\b|\b(?<=Gujarat)[\s-.]+(?=Dwarf[[:digit:]]*$)'
    --- failed re-building 'Introduction.Rmd'
    
    SUMMARY: processing the following file failed:
     'Introduction.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.3.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘Introduction.Rmd’ using rmarkdown_notangle
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 48-59 (Introduction.Rmd)
    Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
    EXPR must be a length 1 vector
    --- failed re-building ‘Introduction.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘Introduction.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-patched-solaris-x86, r-release-osx-x86_64

Version: 0.2.3.4
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 48-59 (Introduction.Rmd)
    Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
    EXPR must be a length 1 vector
    Execution halted
Flavor: r-oldrel-osx-x86_64