CRAN Package Check Results for Package bayestestR

Last updated on 2020-02-25 13:47:52 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.5.2 8.48 379.54 388.02 OK
r-devel-linux-x86_64-debian-gcc 0.5.2 6.10 275.65 281.75 OK
r-devel-linux-x86_64-fedora-clang 0.5.2 450.77 OK
r-devel-linux-x86_64-fedora-gcc 0.5.2 453.65 OK
r-devel-windows-ix86+x86_64 0.5.2 12.00 494.00 506.00 OK
r-devel-windows-ix86+x86_64-gcc8 0.5.2 13.00 503.00 516.00 OK
r-patched-linux-x86_64 0.5.2 7.34 334.17 341.51 OK
r-patched-solaris-x86 0.5.2 637.20 OK
r-release-linux-x86_64 0.5.2 6.39 334.63 341.02 OK
r-release-windows-ix86+x86_64 0.5.2 12.00 488.00 500.00 OK
r-release-osx-x86_64 0.5.2 WARN
r-oldrel-windows-ix86+x86_64 0.5.2 13.00 495.00 508.00 OK
r-oldrel-osx-x86_64 0.5.2 OK

Check Details

Version: 0.5.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘bayes_factors.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Computation of Bayes factors: sampling priors, please wait...
    Computation of Bayes factors: sampling priors, please wait...
    Loading required namespace: bridgesampling
    Warning in .bayesfactor_models_stan(..., denominator = denominator) :
     Bayes factors might not be precise.
    For precise Bayes factors, it is recommended sampling at least 40,000 posterior samples.
    Computation of Bayes factors: estimating marginal likelihood, please wait...
    Warning in .bayesfactor_models_stan(..., denominator = denominator) :
     Bayes factors might not be precise.
    For precise Bayes factors, it is recommended sampling at least 40,000 posterior samples.
    Computation of Bayes factors: estimating marginal likelihood, please wait...
    Computation of Bayes factors: sampling priors, please wait...
    Computation of Bayes factors: sampling priors, please wait...
    Computation of Bayes factors: sampling priors, please wait...
    Computation of Bayes factors: sampling priors, please wait...
    --- finished re-building ‘bayes_factors.Rmd’
    
    --- re-building ‘bayestestR.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: Rcpp
    rstanarm (Version 2.19.2, packaged: 2019-10-01 20:20:33 UTC)
    - Do not expect the default priors to remain the same in future rstanarm versions.
    Thus, R scripts should specify priors explicitly, even if they are just the defaults.
    - For execution on a local, multicore CPU with excess RAM we recommend calling
    options(mc.cores = parallel::detectCores())
    - bayesplot theme set to bayesplot::theme_default()
     * Does _not_ affect other ggplot2 plots
     * See ?bayesplot_theme_set for details on theme setting
    --- finished re-building ‘bayestestR.Rmd’
    
    --- re-building ‘credible_interval.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required namespace: logspline
    --- finished re-building ‘credible_interval.Rmd’
    
    --- re-building ‘example1.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: Rcpp
    rstanarm (Version 2.19.2, packaged: 2019-10-01 20:20:33 UTC)
    - Do not expect the default priors to remain the same in future rstanarm versions.
    Thus, R scripts should specify priors explicitly, even if they are just the defaults.
    - For execution on a local, multicore CPU with excess RAM we recommend calling
    options(mc.cores = parallel::detectCores())
    - bayesplot theme set to bayesplot::theme_default()
     * Does _not_ affect other ggplot2 plots
     * See ?bayesplot_theme_set for details on theme setting
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Computation of Bayes factors: sampling priors, please wait...
    Loading required namespace: logspline
    --- finished re-building ‘example1.Rmd’
    
    --- re-building ‘example2.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: coda
    Loading required package: Matrix
    ************
    Welcome to BayesFactor 0.9.12-4.2. If you have questions, please contact Richard Morey (richarddmorey@gmail.com).
    
    Type BFManual() to open the manual.
    ************
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: Rcpp
    rstanarm (Version 2.19.2, packaged: 2019-10-01 20:20:33 UTC)
    - Do not expect the default priors to remain the same in future rstanarm versions.
    Thus, R scripts should specify priors explicitly, even if they are just the defaults.
    - For execution on a local, multicore CPU with excess RAM we recommend calling
    options(mc.cores = parallel::detectCores())
    - bayesplot theme set to bayesplot::theme_default()
     * Does _not_ affect other ggplot2 plots
     * See ?bayesplot_theme_set for details on theme setting
    Computation of Bayes factors: sampling priors, please wait...
    Loading required namespace: logspline
    --- finished re-building ‘example2.Rmd’
    
    --- re-building ‘example3.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘example3.Rmd’
    
    --- re-building ‘guidelines.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘guidelines.Rmd’
    
    --- re-building ‘indicesEstimationComparison.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in file(file, "rt") :
     URL 'https://raw.github.com/easystats/circus/master/data/bayesSim_study1.csv': status was 'Couldn't resolve host name'
    Quitting from lines 72-78 (indicesEstimationComparison.Rmd)
    Error: processing vignette 'indicesEstimationComparison.Rmd' failed with diagnostics:
    cannot open the connection to 'https://raw.github.com/easystats/circus/master/data/bayesSim_study1.csv'
    --- failed re-building ‘indicesEstimationComparison.Rmd’
    
    --- re-building ‘indicesExistenceComparison.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘indicesExistenceComparison.Rmd’
    
    --- re-building ‘probability_of_direction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in file(file, "rt") :
     URL 'https://raw.github.com/easystats/easystats/master/publications/makowski_2019_bayesian/data/data.csv': status was 'Couldn't resolve host name'
    Quitting from lines 70-92 (probability_of_direction.Rmd)
    Error: processing vignette 'probability_of_direction.Rmd' failed with diagnostics:
    cannot open the connection to 'https://raw.github.com/easystats/easystats/master/publications/makowski_2019_bayesian/data/data.csv'
    --- failed re-building ‘probability_of_direction.Rmd’
    
    --- re-building ‘region_of_practical_equivalence.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: Rcpp
    rstanarm (Version 2.19.2, packaged: 2019-10-01 20:20:33 UTC)
    - Do not expect the default priors to remain the same in future rstanarm versions.
    Thus, R scripts should specify priors explicitly, even if they are just the defaults.
    - For execution on a local, multicore CPU with excess RAM we recommend calling
    options(mc.cores = parallel::detectCores())
    - bayesplot theme set to bayesplot::theme_default()
     * Does _not_ affect other ggplot2 plots
     * See ?bayesplot_theme_set for details on theme setting
    --- finished re-building ‘region_of_practical_equivalence.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘indicesEstimationComparison.Rmd’ ‘probability_of_direction.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64