CRAN Package Check Results for Package NetRep

Last updated on 2021-09-21 06:48:37 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.4 171.47 159.76 331.23 OK
r-devel-linux-x86_64-debian-gcc 1.2.4 110.72 118.11 228.83 OK
r-devel-linux-x86_64-fedora-clang 1.2.4 430.13 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.4 406.14 OK
r-devel-windows-x86_64 1.2.4 158.00 139.00 297.00 OK
r-devel-windows-x86_64-gcc10-UCRT 1.2.4 ERROR
r-patched-linux-x86_64 1.2.4 139.03 151.21 290.24 OK
r-patched-solaris-x86 1.2.4 288.40 ERROR
r-release-linux-x86_64 1.2.4 132.51 151.58 284.09 OK
r-release-macos-arm64 1.2.4 NOTE
r-release-macos-x86_64 1.2.4 NOTE
r-release-windows-ix86+x86_64 1.2.4 392.00 238.00 630.00 OK
r-oldrel-macos-x86_64 1.2.4 NOTE
r-oldrel-windows-ix86+x86_64 1.2.4 387.00 239.00 626.00 OK

Check Details

Version: 1.2.4
Check: installed package size
Result: NOTE
     installed size is 7.4Mb
     sub-directories of 1Mb or more:
     doc 1.4Mb
     libs 5.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.2.4
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.2.4
Check: examples
Result: ERROR
    Running examples in ‘NetRep-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: modulePreservation
    > ### Title: Replication and preservation of network modules across datasets
    > ### Aliases: modulePreservation
    >
    > ### ** Examples
    >
    > # load in example data, correlation, and network matrices for a discovery and test dataset:
    > data("NetRep")
    >
    > # Set up input lists for each input matrix type across datasets. The list
    > # elements can have any names, so long as they are consistent between the
    > # inputs.
    > network_list <- list(discovery=discovery_network, test=test_network)
    > data_list <- list(discovery=discovery_data, test=test_data)
    > correlation_list <- list(discovery=discovery_correlation, test=test_correlation)
    > labels_list <- list(discovery=module_labels)
    >
    > # Assess module preservation: you should run at least 10,000 permutations
    > preservation <- modulePreservation(
    + network=network_list, data=data_list, correlation=correlation_list,
    + moduleAssignments=labels_list, nPerm=1000, discovery="discovery",
    + test="test", nThreads=2
    + )
    [2021-09-04 10:19:52 BST] Validating user input...
    [2021-09-04 10:19:52 BST] Checking matrices for problems...
    [2021-09-04 10:19:52 BST] Input ok!
    [2021-09-04 10:19:52 BST] Calculating preservation of network subsets from
     dataset "discovery" in dataset "test".
    [2021-09-04 10:19:52 BST] Pre-computing network properties in dataset
     "discovery"...
    [2021-09-04 10:19:53 BST] Calculating observed test statistics...
    [2021-09-04 10:19:53 BST] Generating null distributions from 1000
     permutations using 2 threads...
    
    
     0% completed.
     26% completed.
     54% completed.Error in PermutationProcedure(discProps, dataEnv$matrix, correlationEnv$matrix, :
     BLAS/LAPACK routine 'DORGQRNo transposeCo' gave error code -3
    Calls: modulePreservation ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
    
     *** caught segfault ***
    address 6b931a30, cause 'memory not mapped'
    
     *** caught
Flavor: r-patched-solaris-x86

Version: 1.2.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NetRep.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Flavor: r-patched-solaris-x86

Version: 1.2.4
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘core’
Flavor: r-patched-solaris-x86