LoopRig: Integration and Analysis of Chromatin Loop Data

Common coordinate-based workflows involving processed chromatin loop and genomic element data are considered and packaged into appropriate customizable functions. Includes methods for linking element sets via chromatin loops and creating consensus loop datasets.

Version: 0.1.1
Depends: R (≥ 3.4.0)
Imports: GenomicRanges, IRanges, utils, S4Vectors
Suggests: testthat, knitr, rmarkdown, covr
Published: 2019-12-20
Author: Hassaan Maan [aut, cre]
Maintainer: Hassaan Maan <hurmaan99 at gmail.com>
License: GPL-3 | file LICENSE
NeedsCompilation: no
Materials: README NEWS
CRAN checks: LoopRig results

Documentation:

Reference manual: LoopRig.pdf
Vignettes: LoopRig-Tutorial

Downloads:

Package source: LoopRig_0.1.1.tar.gz
Windows binaries: r-devel: LoopRig_0.1.1.zip, r-release: LoopRig_0.1.1.zip, r-oldrel: LoopRig_0.1.1.zip
macOS binaries: r-release (arm64): LoopRig_0.1.1.tgz, r-release (x86_64): LoopRig_0.1.1.tgz, r-oldrel: LoopRig_0.1.1.tgz

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