MonoPhy: Explore Monophyly of Taxonomic Groups in a Phylogeny

Requires rooted phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways. "MonoPhy: a simple R package to find and visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016) <doi:10.7717/peerj-cs.56>.

Version: 1.3.1
Depends: ape, phytools, phangorn, RColorBrewer, taxize
Suggests: knitr, testthat, paleotree, rmarkdown
Published: 2024-05-05
DOI: 10.32614/CRAN.package.MonoPhy
Author: Orlando Schwery [aut, cre], Brian C. O'Meara [aut, ctb], Peter Cowman [ctb]
Maintainer: Orlando Schwery <schwery.macroevo at>
License: GPL-3
NeedsCompilation: no
Citation: MonoPhy citation info
CRAN checks: MonoPhy results


Reference manual: MonoPhy.pdf
Vignettes: MonoPhy Tutorial


Package source: MonoPhy_1.3.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): MonoPhy_1.3.1.tgz, r-oldrel (arm64): MonoPhy_1.3.1.tgz, r-release (x86_64): MonoPhy_1.3.1.tgz, r-oldrel (x86_64): MonoPhy_1.3.1.tgz
Old sources: MonoPhy archive


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