phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data

Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) <http://www.jstor.org/stable/2958919>, and the tests are described in more detail in Callahan et al. (2016) <doi:10.12688/f1000research.8986.1>.

Version: 0.1.0
Depends: R (≥ 3.5.0), ggplot2 (≥ 2.2.1), phyloseq (≥ 1.24.0)
Imports: ggnetwork (≥ 0.5.1), igraph (≥ 1.1.2), intergraph (≥ 2.0.2)
Suggests: knitr, rmarkdown
Published: 2020-02-07
Author: Julia Fukuyama [aut, cre]
Maintainer: Julia Fukuyama <julia.fukuyama at gmail.com>
License: CC0
URL: https://github.com/jfukuyama/phyloseqGraphTest
NeedsCompilation: no
CRAN checks: phyloseqGraphTest results

Documentation:

Reference manual: phyloseqGraphTest.pdf
Vignettes: Graph Testing Vignette

Downloads:

Package source: phyloseqGraphTest_0.1.0.tar.gz
Windows binaries: r-devel: phyloseqGraphTest_0.1.0.zip, r-release: phyloseqGraphTest_0.1.0.zip, r-oldrel: phyloseqGraphTest_0.1.0.zip
macOS binaries: r-release (arm64): phyloseqGraphTest_0.1.0.tgz, r-release (x86_64): phyloseqGraphTest_0.1.0.tgz, r-oldrel: phyloseqGraphTest_0.1.0.tgz
Old sources: phyloseqGraphTest archive

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