segregatr: Segregation Analysis for Variant Interpretation

An implementation of the full-likelihood Bayes factor (FLB) for evaluating segregation evidence in clinical medical genetics. The method was introduced by Thompson et al. (2003) <doi:10.1086/378100>, and further popularised by Bayrak-Toydemir et al. (2008) <doi:10.1016/j.yexmp.2008.03.006>. This implementation allows custom penetrance values and liability classes, and includes specialised pedigree visualisations.

Version: 0.2.0
Depends: pedtools
Imports: pedprobr
Suggests: testthat (≥ 2.1.0)
Published: 2021-04-15
Author: Magnus Dehli Vigeland ORCID iD [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no>
BugReports: https://github.com/magnusdv/segregatr/issues
License: GPL-3
URL: https://github.com/magnusdv/segregatr
NeedsCompilation: no
Language: en-GB
Materials: README NEWS
CRAN checks: segregatr results

Documentation:

Reference manual: segregatr.pdf

Downloads:

Package source: segregatr_0.2.0.tar.gz
Windows binaries: r-devel: segregatr_0.2.0.zip, r-release: segregatr_0.2.0.zip, r-oldrel: segregatr_0.2.0.zip
macOS binaries: r-release (arm64): segregatr_0.2.0.tgz, r-release (x86_64): segregatr_0.2.0.tgz, r-oldrel: segregatr_0.2.0.tgz

Reverse dependencies:

Reverse imports: pedsuite

Linking:

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